Plant
Editosome
Database
Summary
| Editing Factor: | YS1 |
| Synonym: | YELLOW SEEDLING1 |
| Description: | Encoding a PPR protein involved in RNA editing of plastid encoded genes; Natural variation in this locus is associated with increased photosynthetic acclimation. |
| Protein Family: | PPR |
| Subclass: | DYW |
| Physical Interaction: | NA |
| Construct Structure: | PLS-E-DYW |
| Gene ID & Species: | AT3G22690 (Arabidopsis thaliana) |
| Edited Gene(s): | rpoB |
| Editing Type(s): | C-to-U (10) |
| Publication(s): |
[1] The Analysis of the Editing Defects in the Mutant Provides New Clues for the Prediction of RNA Targets of Arabidopsis E+-Class PPR Proteins., Plants (Basel, Switzerland), 2020. [PMID=32098170] [2] Multiple PPR protein interactions are involved in the RNA editing system in mitochondria and plastids., Proceedings of the National Academy of Sciences of the United States of America, 2017. [PMID=28761003] [3] The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth., The Plant journal : for cell and molecular biology, 2009. [PMID=19054358] |
Editing Details
| Species | Gene ID | Organelle | Edited Gene | Position | Region | Nuclear Genome | Organelle Genome | Other Position Region | Other Position | Editing Type | Codon | Amino Acid | Molecular Effect | Experiment Details | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Arabidopsis thaliana | AT3G22690 | Chloroplast Plastid |
rpoB | 338 | CDS | NA EnsemblGenomes (release 39) |
NA BK010421 |
NA | NA | C-to-U | UCU=>UUU NA=>NA |
S=>F NA=>NA |
Recoding NA |
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Last update: Feb 2026
(version 2.0)