| Species | #Sub-Species | Gene-based Pan-Genome | Literature Validated Resistance Genes | Predicted Microbial/Disease Resistance Genes | Transcription Factor | KEGG Pathway | #Genomic Variations | #Genome Synteny | Graph-based Pan-Genome | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Core | Shell | Cloud | Core | Shell | Cloud | Core | Shell | Cloud | Core | Shell | Cloud | Core | Shell | Cloud | |||||
| Arabidopsis Thaliana | 8 | 202608 | 15324 | 788 | 14737 | 436 | 25 | 10138 | 808 | 13 | 13419 | 288 | 2 | 44791 | 889 | 61 | 7034915 | 45806 | at.graph.pan-genome.tar.gz |
| Brassica Napus | 5 | 337358 | 122875 | 26652 | 21225 | 5617 | 848 | 14886 | 4801 | 755 | 23307 | 5766 | 701 | 68567 | 15368 | 2037 | 25569967 | 203731 | bn.graph.pan-genome.tar.gz |
| Brassica Rapa | 13 | 364519 | 226178 | 9315 | 26088 | 9360 | 211 | 17604 | 8698 | 172 | 29818 | 8106 | 137 | 87033 | 26879 | 1254 | 38184265 | 435790 | br.graph.pan-genome.tar.gz |
| Maize | 26 | 626206 | 415969 | 13977 | 40579 | 21615 | 242 | 40579 | 21615 | 242 | 33770 | 12410 | 149 | 47872 | 12981 | 109 | - | - | - |
| Potato | 8 | 244426 | 182426 | 39130 | 9642 | 2927 | 763 | 9642 | 2927 | 763 | 16419 | 7785 | 1307 | 17348 | 5689 | 345 | 61249544 | 312556 | po.graph.pan-genome.tar.gz |
| Raphanus Sativus | 11 | 332303 | 173819 | 37762 | 24002 | 6376 | 890 | 24002 | 6376 | 890 | 16572 | 6919 | 554 | 23246 | 6639 | 481 | - | - | - |
| Rice | 32 | 661754 | 617010 | 17011 | 32919 | 8870 | 72 | 32919 | 8870 | 72 | 46323 | 24995 | 130 | 39376 | 11408 | 67 | 96681062 | 719831 | ri.graph.pan-genome.tar.gz |
| Sorghum | 12 | 180893 | 218049 | 10429 | 8874 | 4360 | 133 | 8874 | 4360 | 133 | 10312 | 9414 | 117 | 11373 | 9045 | 70 | 45120430 | 426174 | sr.graph.pan-genome.tar.gz |
| Soybean | 29 | 1045394 | 1235441 | 53627 | 54042 | 50012 | 1860 | 54042 | 50012 | 1860 | 67560 | 65569 | 1425 | 82933 | 75980 | 1540 | 125279976 | 721825 | sy.graph.pan-genome.tar.gz |
| Strawberry | 5 | 79537 | 38424 | 8704 | 3524 | 750 | 118 | 3524 | 750 | 118 | 3489 | 2093 | 233 | 4564 | 1710 | 103 | 13879965 | 45147 | st.graph.pan-genome.tar.gz |
| Tomato | 46 | 944664 | 675513 | 4881 | 35423 | 10280 | 20 | 35423 | 10280 | 20 | 50281 | 20055 | 47 | 69630 | 18711 | 10 | 113973246 | 434238 | to.graph.pan-genome.tar.gz |
NOTE
● Means the gene-based pan-genome's trend of related species is closed predicted by PanGP, while ● means the gene-based pan-genome's trend of related species is open predicted by PanGP in PlantPan. Clicking on the species name in the table will take you to the detailed page of the corresponding species. Similarly, clicking on the digits in this table will take you to the detailed page of the corresponding information. Additionally, the graph-based pan-genome can be downloaded by clicking.
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