BrainBase
a curated knowledgebase for brain diseases
| Sample ID | Gene Symbol | Glioma Grade | Chr | Start Site | End Site | RET | ALT | Amino Acid Change | Effect | Filter | DNA VAF |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TCGA-12-0826-01A | CYP4Z2P | GBM | chr1 | 46859763 | 46859763 | G | A | non_coding_transcript_exon_var | PASS | 0.181451613 | |
| TCGA-12-0826-01A | HAO2 | GBM | chr1 | 119393841 | 119393841 | G | T | 3_prime_UTR_variant | PASS | 0.225053079 | |
| TCGA-12-0826-01A | USH2A | GBM | chr1 | 215741487 | 215741487 | G | A | p.P3867S | missense_variant | PASS | 0.147540984 |
| TCGA-12-0826-01A | DISP1 | GBM | chr1 | 223005787 | 223005787 | T | - | p.F1464Lfs*4 | frameshift_variant | PASS | 0.121794872 |
| TCGA-12-0826-01A | OR2M5 | GBM | chr1 | 248145378 | 248145378 | C | T | p.T77T | synonymous_variant | PASS | 0.108510638 |
| TCGA-12-0826-01A | SRD5A2 | GBM | chr2 | 31526076 | 31526076 | C | T | 3_prime_UTR_variant | PASS | 0.363636364 | |
| TCGA-12-0826-01A | TASOR | GBM | chr3 | 56646894 | 56646894 | G | A | p.P615S | missense_variant | PASS | 0.5 |
| TCGA-12-0826-01A | EPHA6 | GBM | chr3 | 96987796 | 96987796 | G | A | p.R306H | missense_variant | PASS | 0.435 |
| TCGA-12-0826-01A | BCHE | GBM | chr3 | 165830863 | 165830863 | A | G | p.L57L | synonymous_variant | PASS | 0.401746725 |
| TCGA-12-0826-01A | ADH1B | GBM | chr4 | 99318819 | 99318819 | A | C | p.V29G | missense_variant | PASS | 0.523178808 |