BrainBase a curated knowledgebase for brain diseases

Sample ID Gene Symbol Glioma Grade Chr Start Site End Site RET ALT Amino Acid Change Effect Filter DNA VAF
TCGA-12-0826-01A CYP4Z2P GBM chr1 46859763 46859763 G A non_coding_transcript_exon_var PASS 0.181451613
TCGA-12-0826-01A HAO2 GBM chr1 119393841 119393841 G T 3_prime_UTR_variant PASS 0.225053079
TCGA-12-0826-01A USH2A GBM chr1 215741487 215741487 G A p.P3867S missense_variant PASS 0.147540984
TCGA-12-0826-01A DISP1 GBM chr1 223005787 223005787 T - p.F1464Lfs*4 frameshift_variant PASS 0.121794872
TCGA-12-0826-01A OR2M5 GBM chr1 248145378 248145378 C T p.T77T synonymous_variant PASS 0.108510638
TCGA-12-0826-01A SRD5A2 GBM chr2 31526076 31526076 C T 3_prime_UTR_variant PASS 0.363636364
TCGA-12-0826-01A TASOR GBM chr3 56646894 56646894 G A p.P615S missense_variant PASS 0.5
TCGA-12-0826-01A EPHA6 GBM chr3 96987796 96987796 G A p.R306H missense_variant PASS 0.435
TCGA-12-0826-01A BCHE GBM chr3 165830863 165830863 A G p.L57L synonymous_variant PASS 0.401746725
TCGA-12-0826-01A ADH1B GBM chr4 99318819 99318819 A C p.V29G missense_variant PASS 0.523178808