Accession PRJCA023932
Title Integration of pathologic characteristics, genetic risk and lifestyle exposure for colorectal cancer survival assessment
Relevance Medical
Data types Phenotype or Genotype
Organisms Homo sapiens
Description The development of an effective survival prediction tool is key for reducing colorectal cancer mortality. Here, we apply a three-stage study to devise a polygenic prognostic score (PPS) for stratifying colorectal cancer overall survival. Leveraging two cohorts of 3,703 patients, we first perform a genome-wide survival association analysis to develop eight candidate PPSs. Further using an independent cohort with 470 patients, we identify the 287 variants-derived PPS (i.e., PPS287) achieving an optimal prediction performance [hazard ratio (HR) per SD = 1.99], accompanied by additional tests in two external cohorts, with HRs per SD of 1.90 (543 patients) and 1.80 (713 patients). Notably, the detrimental impact of pathologic characteristics and genetic risk could be attenuated by a healthy lifestyle, yielding a 7.62% improvement in the 5-year overall survival rate. Therefore, our findings demonstrate the integrated contribution of pathologic characteristics, germline variants, and lifestyle exposure to the prognosis of colorectal cancer patients.
Sample scope Multiisolate
Release date 2024-02-29
Publication
PubMed ID Article title Journal name DOI Year
38589358 Integration of pathologic characteristics, genetic risk and lifestyle exposure for colorectal cancer survival assessment Nature Communications 10.1038/s41467-024-47204-9 2024
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) General Program 81822039
Submitter Junyi Xin (junyixin@njmu.edu.cn)
Organization Nanjing Medical University
Submission date 2024-02-28

Project Data

Resource name Description