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Category
Visualization
BarBoxComutationDotForestHeatmapHistogramLollipopMafsummaryMaftitvManhattanOncoprintPM-AdiversityPM-comp-corPM-comp-funcPM-comp-taxaPM-DistributionPM-HclusterPM-HeatmapPM-Marker-CorrPM-Marker-RFscorePM-Marker-TestPM-NetworkPM-PcaPM-PcoaPM-plot-taxaQ-QSurvivalUpsetVenn
Sequence alignment
BLASTDotmatcherDotpathDottupNeedlePM-BdiversityPM-extract-rnaPM-parallel-metaPolydotWater
RNA Expression
Bulk RNA-seq Data AnalysisCancer Alternative Splicing AnalysisCCLHunterCIRI-deepCIRI3Cross-disease analysisDisease predictionEditing site annotationEditing site identificationEditingFactorDetectorFunGenGene-disease network constructionNCSelPredRNA-seq AnalysisSingle-cell RNA-seq Data AnalysisSPIRALTIVar diffTIVar predictVisualization of scRNA-seq Data Analysis Results
Variome analysis
BarcodeBLASTBarcodeFindereasyGWASExpPatternGeneFinderHaplotype analysisHapMapHapSnapLeadSNPFinderRice Varieties IdentificationRice Yield EstimationSeqFetchVersionMapWheat Head Estimation
Epigenome analysis
Age PredictorBS-RNAComparative analysis in nucleosomesDMR AnnotationDMR ToolkitEnrichment & AnnotationEnrichment analysis in nucleosome occupancyEWAS Network VisualizationGMQNIDMPLollipop PlotterMRAS
Long non-coding RNA
ClassificationFunctional PredictionID conversionLGClncbook-BLASTLncBot
Virus
COVID-19 genome variation annotationCOVID-19 haplotype analysisDenovo AssemblyEvolutionary treeFastq-to-VariantsGenealogy and Evolutionary AnalysisGenome AnnotationGenome TracingMcANMonkeypox virus genome variation annotationMonkeypox virus genome variation identificationPangolin COVID-19 Lineage AssignerSeqQCVENASVISTA
Single-cell omics
BroCOLICell Type ComparatorCell Type PredictorFGOTGOTSCSESSpaMITACOSUCASpatial
Image Processing
Image CroppingImage DenoisingImage FlippingImage PartitioningImage Resizing
Others
APAcatcherComposition analysisCross-model analysisCross-species analysisCross-stages analysisHomolog FinderLUTLSRSMIAncRNA-eQTLPM-predict-func
User Manual
e.g., Bar; Heatmap; Needle; Venn;
Visualization
Sequence alignment
RNA expression
Epigenome analysis
Variome analysis
Long non-coding RNA
Virus
Single-cell omics
Image processing
Others
If you use any service in this site, please cite: Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023. Nucleic Acids Research vol. 51, D1 (2023): D18-D28. [OpenLB: OLB-PM-36420893] [PMID: 36420893]
Tool Counts
10
Categories
    
130
Tools
Visualization 30 Long non-coding RNA 6
Sequence alignment 10 Virus 15
RNA expression 19 Single-cell omics 9
Variome analysis 14 Image processing 5
Epigenome analysis 12 Others 10
Highly used
Tool #Runs
plot_heatmap 2242
needle 1929
plot_venn 1411
plot_bar 1074
News & updates
Search function were available on BIT for user since 2025-07-11
BIT User manual were available for download since 2024-09-26
Image processing and others tools were available on 2023-05-28
BIT (beta version) was available for online testing since 2022-01-15
Visualization and sequence alignment tools were available on 2021-12-01
Contact
If you have any questions or comments, please feel free to contact: bit@big.ac.cn
QQ Group: 892675893
Citation
CNCB-NGDC Members and Partners. Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D27-D38. doi: 10.1093/nar/gkab951. PMID: 34718731; PMCID: PMC8728233.