Accession	PRJNA494798
Title	RNA-sequencing on cassava fine roots colonized by Rhizophagus irregularis
Relevance	Agricultural
Data types	Raw sequence reads
Sample scope	Multispecies
Description	We evaluated the plant and fungal genome wide RNA expression of the AM fungi Rhizophagus irregularis when colonizing cassava fine roots in a greenhouse experiment. The plants were grown in sterile soil and inoculated with Rhizophagus irregularis spores.
Organization	University of Lausanne
Data Source	NCBI

Project Data

Resource name	Description
Experiment (34) show	-
SRX4991127	RNAseq of Manihot esculenta cultivar BRA337 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate B1, biological replicate 1
SRX4991130	RNAseq of Manihot esculenta cultivar BRA337 fine roots inoculated with Rhizophagus irregularis Co-inoculation of isolates B1 and DAOM197198, biological replicate 1
SRX4991132	RNAseq of Manihot esculenta cultivar BRA337 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate B1, biological replicate 2
SRX4991129	RNAseq of Manihot esculenta cultivar BRA337 fine roots Mock inoculated, biological replicate 1
SRX4991131	RNAseq of Manihot esculenta cultivar BRA337 fine roots inoculated with Rhizophagus irregularis Co-inoculation of isolates B1 and DAOM197198, biological replicate 2
SRX4991135	RNAseq of Manihot esculenta cultivar BRA337 fine roots Mock inoculated, biological replicate 3
SRX4991128	RNAseq of Manihot esculenta cultivar BRA337 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate DAOM197198, biological replicate 1
SRX4991137	RNAseq of Manihot esculenta cultivar CM4574-7 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate DAOM197198, biological replicate 2
SRX4991134	RNAseq of Manihot esculenta cultivar BRA337 fine roots Mock inoculated, biological replicate 2
SRX4991136	RNAseq of Manihot esculenta cultivar BRA337 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate B1, biological replicate 3
SRX4991140	RNAseq of Manihot esculenta cultivar COL2215 fine roots Mock inoculated, biological replicate 2
SRX4991133	RNAseq of Manihot esculenta cultivar BRA337 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate DAOM197198, biological replicate 2
SRX4991142	RNAseq of Manihot esculenta cultivar COL2215 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate DAOM197198, biological replicate 2
SRX4991141	RNAseq of Manihot esculenta cultivar COL2215 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate B1, biological replicate 3
SRX4991145	RNAseq of Manihot esculenta cultivar CM4574-7 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate DAOM197198, biological replicate 3
SRX4991138	RNAseq of Manihot esculenta cultivar CM4574-7 fine roots Mock inoculated, biological replicate 2
SRX4991147	RNAseq of Manihot esculenta cultivar CM4574-7 fine roots inoculated with Rhizophagus irregularis Co-inoculation of isolates B1 and DAOM197198, biological replicate 1
SRX4991144	RNAseq of Manihot esculenta cultivar BRA337 fine roots inoculated with Rhizophagus irregularis Co-inoculation of isolates B1 and DAOM197198, biological replicate 3
SRX4991146	RNAseq of Manihot esculenta cultivar CM4574-7 fine roots inoculated with Rhizophagus irregularis Co-inoculation of isolates B1 and DAOM197198, biological replicate 2
SRX4991150	RNAseq of Manihot esculenta cultivar CM4574-7 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate B1, biological replicate 2
SRX4991143	RNAseq of Manihot esculenta cultivar BRA337 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate DAOM197198, biological replicate 3
SRX4991152	RNAseq of Manihot esculenta cultivar CM4574-7 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate B1,, biological replicate 3
SRX4991149	RNAseq of Manihot esculenta cultivar CM4574-7 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate B1, biological replicate 1
SRX4991151	RNAseq of Manihot esculenta cultivar CM4574-7 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate DAOM197198, biological replicate 1
SRX4991155	RNAseq of Manihot esculenta cultivar COL2215 fine roots inoculated with Rhizophagus irregularis Co-inoculation of isolates B1 and DAOM197198, biological replicate 2
SRX4991148	RNAseq of Manihot esculenta cultivar CM4574-7 fine roots Mock inoculated, biological replicate 1
SRX4991157	RNAseq of Manihot esculenta cultivar COL2215 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate B1, biological replicate 1
SRX4991154	RNAseq of Manihot esculenta cultivar COL2215 fine roots inoculated with Rhizophagus irregularis Co-inoculation of isolates B1 and DAOM197198, biological replicate 1
SRX4991156	RNAseq of Manihot esculenta cultivar COL2215 fine roots inoculated with Rhizophagus irregularis Co-inoculation of isolates B1 and DAOM197198, biological replicate 3
SRX4991160	RNAseq of Manihot esculenta cultivar COL2215 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate B1, biological replicate 2
SRX4991153	RNAseq of Manihot esculenta cultivar CM4574-7 fine roots Mock inoculated, biological replicate 3
SRX4991159	RNAseq of Manihot esculenta cultivar COL2215 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate DAOM197198, biological replicate 1
SRX4991158	RNAseq of Manihot esculenta cultivar COL2215 fine roots Mock inoculated, biological replicate 1
SRX4991139	RNAseq of Manihot esculenta cultivar COL2215 fine roots inoculated with Rhizophagus irregularis single inoculation of isolate DAOM197198, biological replicate 3

Project Data

Research & Resources

Featured

Alliance & Collaboration

Conference & Outreach

About