- Scientific Name
- Pseudomonas savastanoi pv. glycinea
- Common Names
- Pseudomonas syringae glycinea, Pseudomonas syringae (PV. GLYCINEA)
- Bioproject
- PRJCA000661
- Biosample
- SAMC018832
- Accession No.
- GWHAAAK00000000
- GWH reannotation accession
- GWHRA_AAAK00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Plant Protection, Agronomy, Jilin Agricultural University
- Contact
- Meili Chen(chenml@big.ac.cn), Baohui Lu(LBH860110@126.com)
- Sequence author(s)
- Meili Chen, Baohui Lu
- Released Date
- 2021-01-25
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo2 2012.12.28
GapCloser 1.12 - Sequencing & coverage
- Illumina HiSeq 2000 2114.0
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAAAK00000000 | GWHRA_AAAK00000000.1 | psgnc12 | Draft genome in scaffold level | 2021-01-25 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 6,118,514 |
| GC content | 58.34% |
| Scaffold sequence No. | 78 |
| Maximum scaffold sequence length (bp) | 707,691 |
| Minimum scaffold sequence length (bp) | 205 |
| Average scaffold sequence length (bp) | 78,442 |
| Scaffold N50 (bp) | 339,683 |
| Scaffold N90 (bp) | 112,856 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Total | |
|---|---|---|---|---|
| Total | 5,458 | 53 | 3 | 5,514 |
Statistics of Genome Assembly
| Genome size (bp) | 6,118,514 |
| GC content | 58.34% |
| Scaffold sequence No. | 78 |
| Maximum scaffold sequence length (bp) | 707,691 |
| Minimum scaffold sequence length (bp) | 205 |
| Average scaffold sequence length (bp) | 78,442 |
| Scaffold N50 (bp) | 339,683 |
| Scaffold N90 (bp) | 112,856 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5,318 | 52 | 3 | 1 | 105 | 90 | 5,569 |