- Scientific Name
- Zea mays
- Common Names
- maize; Zea mays var. japonica
- Bioproject
- PRJCA002331
- Biosample
- SAMC146578
- Accession No.
- GWHACCD00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 73,140,072 (SNP), 16,129,758 (Indel)
- Submitter Organization
- College of Life Sciences, Shandong Agricultural University
- Contact
- Zhiming Zhang(zhzhang@sdau.edu.cn)
- Sequence author(s)
- Zhiming Zhang
- Released Date
- 2021-12-10
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Nextdenovo v1.0
- Sequencing & coverage
- Nanopore 86.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 2,191,062,017 |
| GC content | 45.80% |
| Chromosomes sequence No. | 10 |
| Genome sequence No. | 182 |
| Maximum genome sequence length (bp) | 303,676,360 |
| Minimum genome sequence length (bp) | 23,769 |
| Average genome sequence length (bp) | 12,038,802 |
| Genome sequence N50 (bp) | 220,549,688 |
| Genome sequence N90 (bp) | 151,111,983 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 63,613 | 63,613 |
| Others | 210 | 210 |
| Total | 63,823 | 63,823 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 9,517 | 9,517 |
| chr10 | 4,577 | 4,577 |
| chr2 | 7,637 | 7,637 |
| chr3 | 6,890 | 6,890 |
| chr4 | 6,746 | 6,746 |
| chr5 | 7,330 | 7,330 |
| chr6 | 5,387 | 5,387 |
| chr7 | 5,074 | 5,074 |
| chr8 | 5,605 | 5,605 |
| chr9 | 4,850 | 4,850 |
| Others | 210 | 210 |
| Total | 63,823 | 63,823 |