- Scientific Name
- Severe acute respiratory syndrome coronavirus 2
- Common Names
- -
- Bioproject
- PRJCA003179
- Biosample
- SAMC204260
- Accession No.
- GWHAOKQ01000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR176051
- GVM variations of the species
- 16,114 (SNP), 820 (Indel)
- Submitter Organization
- National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences / China National Center for Bioinformation
- Contact
- Cuiping Li, licp@big.ac.cn
- Sequence author(s)
- Nazish Badar, Aamer Ikram, Muhammad Salman, Massab Umair, Hamza Ahmad Mirza, Abdul Ahad, Sana Tamim, Asiya Israr, Irfan Hussain, Amir Ali Abbasi, Bing Zhang, Mingkun Li, Cuiping Li, Shuhui Song, Meili Chen, Wenming Zhao, Yiming Bao, Yongbiao Xue, Yungui Yang
- Released Date
- 2021-03-03
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- BWA 0.7.10-r789
- Sequencing & coverage
- Illumina 16958
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Shuhui Song, et al. Genomic Epidemiology of SARS-CoV-2 in Pakistan. Genomics, Proteomics & Bioinformatics. 2021.
Statistics of Genome Assembly
| Genome size (bp) | 29,838 |
| GC content | 37.95% |
| Genome sequence No. | 1 |
| Maximum genome sequence length (bp) | 29,838 |
| Minimum genome sequence length (bp) | 29,838 |
| Average genome sequence length (bp) | 29,838 |
| Genome sequence N50 (bp) | 29,838 |
| Genome sequence N90 (bp) | 29,838 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 12 | 12 |