- Scientific Name
- Oryza rufipogon
- Common Names
- common wild rice, red rice;
- Bioproject
- PRJCA002346
- Biosample
- SAMC142508
- Accession No.
- GWHACCP00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- college of agriculture, South China Agricultural University
- Contact
- Wei Li, liweisdau@126.com
- Sequence author(s)
- Wei Li
- Released Date
- 2020-03-19
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- Falcon Version 0.3.0
- Sequencing & coverage
- PacBio 100.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Wei Li, et al. SMRT sequencing of the Oryza rufipogon genome reveals the genomic basis of rice adaptation. Communications Biology. 2020, 3: 167.
Statistics of Genome Assembly
| Genome size (bp) | 377,175,342 |
| GC content | 43.47% |
| Scaffold sequence No. | 842 |
| Maximum scaffold sequence length (bp) | 7,550,243 |
| Minimum scaffold sequence length (bp) | 246 |
| Average scaffold sequence length (bp) | 447,952 |
| Scaffold N50 (bp) | 2,214,952 |
| Scaffold N90 (bp) | 487,719 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 33,903 | 33,903 |