- Scientific Name
- Haemaphysalis longicornis
- Common Names
- longhorned tick;
- Bioproject
- PRJCA047272
- Biosample
- SAMC5973560
- Accession No.
- GWHGQOW00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR2194043
- GVM variations of the species
- -
- Submitter Organization
- School of Public Health, Shandong First Medical University & Shandong Academy of Medical Sciences
- Contact
- Qiang Lyu(lvqiang7759@163.com)
- Sequence author(s)
- Qiang Lyu
- Released Date
- 2026-05-22
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 0.16.1
Juicer 1.6 - Sequencing & coverage
- PacBio Seque ll 33
Hi-C 151 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 3,095,142,271 |
| GC content | 47.65% |
| Chromosomes sequence No. | 11 |
| Genome sequence No. | 670 |
| Maximum genome sequence length (bp) | 369,963,070 |
| Minimum genome sequence length (bp) | 11,071 |
| Average genome sequence length (bp) | 4,619,615 |
| Genome sequence N50 (bp) | 247,198,595 |
| Genome sequence N90 (bp) | 128,606,087 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Total | |
|---|---|---|---|
| Chromosome | 29,419 | 242 | 29,661 |
| Others | 2,431 | 18 | 2,449 |
| Total | 31,850 | 260 | 32,110 |
Annotation Details
| ChrID | Protein | Pseudogene | Total |
|---|---|---|---|
| chr1 | 4,525 | 19 | 4,544 |
| chr10 | 2,210 | 16 | 2,226 |
| chr11 | 2,213 | 28 | 2,241 |
| chr2 | 2,528 | 32 | 2,560 |
| chr3 | 3,763 | 32 | 3,795 |
| chr4 | 2,697 | 20 | 2,717 |
| chr5 | 2,401 | 23 | 2,424 |
| chr6 | 3,134 | 30 | 3,164 |
| chr7 | 1,698 | 11 | 1,709 |
| chr8 | 1,800 | 19 | 1,819 |
| chr9 | 2,450 | 12 | 2,462 |
| Others | 2,431 | 18 | 2,449 |
| Total | 31,850 | 260 | 32,110 |