- Scientific Name
- Haemaphysalis longicornis
- Common Names
- longhorned tick;
- Bioproject
- PRJCA047272
- Biosample
- SAMC5973562
- Accession No.
- GWHGQOX00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR2194048
- GVM variations of the species
- -
- Submitter Organization
- School of Public Health, Shandong First Medical University & Shandong Academy of Medical Sciences
- Contact
- Qiang Lyu(lvqiang7759@163.com)
- Sequence author(s)
- Qiang Lyu
- Released Date
- 2026-05-22
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 0.16.1
Ragtag 2.1.0 - Sequencing & coverage
- PacBio Seque ll 33
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 3,080,527,364 |
| GC content | 47.78% |
| Chromosomes sequence No. | 11 |
| Genome sequence No. | 1,801 |
| Maximum genome sequence length (bp) | 313,111,691 |
| Minimum genome sequence length (bp) | 18,946 |
| Average genome sequence length (bp) | 1,710,454 |
| Genome sequence N50 (bp) | 252,261,401 |
| Genome sequence N90 (bp) | 12,946,364 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Total | |
|---|---|---|---|
| Chromosome | 29,384 | 234 | 29,618 |
| Others | 3,922 | 30 | 3,952 |
| Total | 33,306 | 264 | 33,570 |
Annotation Details
| ChrID | Protein | Pseudogene | Total |
|---|---|---|---|
| chr1 | 4,028 | 32 | 4,060 |
| chr10 | 2,226 | 18 | 2,244 |
| chr11 | 2,519 | 37 | 2,556 |
| chr2 | 2,510 | 15 | 2,525 |
| chr3 | 3,625 | 33 | 3,658 |
| chr4 | 2,873 | 21 | 2,894 |
| chr5 | 2,569 | 21 | 2,590 |
| chr6 | 3,234 | 23 | 3,257 |
| chr7 | 1,594 | 9 | 1,603 |
| chr8 | 1,829 | 10 | 1,839 |
| chr9 | 2,377 | 15 | 2,392 |
| Others | 3,922 | 30 | 3,952 |
| Total | 33,306 | 264 | 33,570 |