- Scientific Name
- Zizania latifolia
- Common Names
- Zizania caduciflora
- Bioproject
- PRJCA043499
- Haplotype bioproject
- PRJCA043704
- Biosample
- SAMC5660916
- Accession No.
- GWHGVJB00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Life Sciences, China Jiliang University
- Contact
- JunCheng Wu, 438126756@qq.com
- Sequence author(s)
- Zihong Ye
- Released Date
- 2025-10-28
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifisam v0.19.8
- Sequencing & coverage
- PacBio 89.60
Oxford Nanopore 112.32
Illumina 151.67
Hi-C 373.86 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 610,061,711 |
| GC content | 43.04% |
| Chromosomes sequence No. | 17 |
| Genome sequence No. | 618 |
| Maximum genome sequence length (bp) | 51,206,065 |
| Minimum genome sequence length (bp) | 2,330 |
| Average genome sequence length (bp) | 987,155 |
| Genome sequence N50 (bp) | 33,274,111 |
| Genome sequence N90 (bp) | 23,473,183 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 34,378 | 34,378 |
| Others | 720 | 720 |
| Total | 35,098 | 35,098 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,101 | 3,101 |
| chr10 | 1,514 | 1,514 |
| chr11 | 1,680 | 1,680 |
| chr12 | 1,879 | 1,879 |
| chr13 | 1,455 | 1,455 |
| chr14 | 1,062 | 1,062 |
| chr15 | 1,416 | 1,416 |
| chr16 | 1,539 | 1,539 |
| chr17 | 1,135 | 1,135 |
| chr2 | 2,687 | 2,687 |
| chr3 | 2,989 | 2,989 |
| chr4 | 3,589 | 3,589 |
| chr5 | 1,664 | 1,664 |
| chr6 | 1,511 | 1,511 |
| chr7 | 2,305 | 2,305 |
| chr8 | 2,663 | 2,663 |
| chr9 | 2,189 | 2,189 |
| Others | 720 | 720 |
| Total | 35,098 | 35,098 |