Scientific Name
Zizania latifolia
Common Names
Zizania caduciflora
Bioproject
PRJCA043499
Haplotype bioproject
PRJCA043706
Biosample
SAMC5660916
Accession No.
GWHGVJC00000000.1
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
College of Life Sciences, China Jiliang University
Contact
JunCheng Wu, 438126756@qq.com
Sequence author(s)
Zihong Ye
Released Date
2025-10-28
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
hifisam v0.19.8
Sequencing & coverage
PacBio 89.60
Oxford Nanopore 112.32
Illumina 151.67
Hi-C 373.86
Download
DNA GFF RNA CDS Protein
Publication(s)
-
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHGVJC00000000.1 - zj7.hap2 Draft genome in chromosome level 2025-10-28 DNA GFF RNA CDS Protein

Statistics of Genome Assembly

Genome size (bp) 585,517,797
GC content 43.30%
Chromosomes sequence No. 17
Genome sequence No. 393
Maximum genome sequence length (bp) 51,064,780
Minimum genome sequence length (bp) 17,533
Average genome sequence length (bp) 1,489,867
Genome sequence N50 (bp) 33,337,281
Genome sequence N90 (bp) 22,786,726
Annotation of Whole Genome Assembly
Protein Total
Chromosome 36,253 36,253
Others 648 648
Total 36,901 36,901
Annotation Details
ChrID Protein Total
chr1 3,224 3,224
chr10 1,621 1,621
chr11 1,794 1,794
chr12 2,012 2,012
chr13 1,524 1,524
chr14 1,134 1,134
chr15 1,510 1,510
chr16 1,606 1,606
chr17 1,197 1,197
chr2 2,813 2,813
chr3 3,168 3,168
chr4 3,765 3,765
chr5 1,799 1,799
chr6 1,607 1,607
chr7 2,420 2,420
chr8 2,767 2,767
chr9 2,292 2,292
Others 648 648
Total 36,901 36,901