- Scientific Name
- Populus euphratica
- Common Names
- Euphrates poplar; Populus diversifolia
- Bioproject
- PRJCA002485
- Biosample
- SAMC207339
- Accession No.
- GWHAOPU01000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University
- Contact
- Tao Ma, matao.yz@gmail.com
- Sequence author(s)
- Wenlu Yang, Zhiyang Zhang
- Released Date
- 2020-12-17
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- NextDenovo v2.2.0
- Sequencing & coverage
- Nanopore 70.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Wenlu Yang, et al. A general model to explain repeated turnovers of sex determination in the Salicaceae. Molecular Biology and Evolution. 2020.
Statistics of Genome Assembly
| Genome size (bp) | 13,747,427 |
| GC content | 32.57% |
| Chromosomes sequence No. | 1 |
| Contig sequence No. | 1 |
| Maximum contig sequence length (bp) | 13,747,427 |
| Minimum contig sequence length (bp) | 13,747,427 |
| Average contig sequence length (bp) | 13,747,427 |
| Contig N50 (bp) | 13,747,427 |
| Contig N90 (bp) | 13,747,427 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 1,385 | 1,385 |
| Total | 1,385 | 1,385 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chrY | 1,385 | 1,385 |
| Total | 1,385 | 1,385 |