- Scientific Name
- Solanum tuberosum
- Common Names
- potatoes; potato;
- Bioproject
- PRJCA003448
- Biosample
- SAMC238523
- Accession No.
- GWHAORW01000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR180692
- GVM variations of the species
- 48,728,403 (SNP), 3,352,602 (Indel)
- Submitter Organization
- College of Horticulture, Jilin Agricultural University
- Contact
- Jing-Ying Zhang, zhangjingying@jlau.edu.cn
- Sequence author(s)
- Jing-Ying Zhang
- Released Date
- 2020-09-15
- Assembly Level
- Complete genome
- Genome Representation
- Partial Genome ( Chloroplast )
- Assembly method
- NOVOPlasty v.3.8.3
- Sequencing & coverage
- Illumina Hiseq 1000
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Jing-Ying Zhang, et al. Characterization of the complete chloroplast genome of the Solanum tuberosum L. cv. Atlantic (Solanaceae). Mitochondrial DNA. Part B, Resources. 2021, 6(1): 73-75.
Statistics of Genome Assembly
| Genome size (bp) | 155,296 |
| GC content | 37.88% |
| Organellas sequence No. | 1 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Others | Total | |
|---|---|---|---|---|---|
| Chloroplast | 87 | 37 | 8 | 2 | 134 |
| Total | 87 | 37 | 8 | 2 | 134 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | Others | Total |
|---|---|---|---|---|---|
| Chloroplast | 87 | 37 | 8 | 2 | 134 |
| Total | 87 | 37 | 8 | 2 | 134 |