- Scientific Name
- Panax notoginseng
- Common Names
- sanchi ginseng, san-qi, tienchi; Aralia quinquefolia var. notoginseng, Panax pseudoginseng var. notoginseng
- Bioproject
- PRJCA003451
- Biosample
- SAMC238534
- Accession No.
- GWHAOSA00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Traditional Chinese Medicine, Capital Medical University
- Contact
- Wei Gao(weigao@ccmu.edu.cn)
- Sequence author(s)
- Zhouqian Jiang
- Released Date
- 2021-09-01
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu，WTDBG 2021-09
SmartDenovo 2021-09 - Sequencing & coverage
- PacBio 106.79
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Zhouqian Jiang, et al. The chromosome-level reference genome assembly for Panax notoginseng and insights into ginsenoside biosynthesis. Plant Communications. 2021, 2(1): 100113.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAOSA00000000 | - | PN-CCMU201908 | Draft genome in chromosome level | 2021-09-01 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 2,660,677,618 |
| GC content | 34.45% |
| Chromosomes sequence No. | 12 |
| Genome sequence No. | 219 |
| Maximum genome sequence length (bp) | 295,554,597 |
| Minimum genome sequence length (bp) | 1,041 |
| Average genome sequence length (bp) | 12,149,213 |
| Genome sequence N50 (bp) | 216,472,261 |
| Genome sequence N90 (bp) | 179,501,441 |