- Scientific Name
- Sillago sihama
- Common Names
- silver sillago; northern whiting; Atherina sihama
- Bioproject
- PRJCA003376
- Biosample
- SAMC232401
- Accession No.
- GWHAOSB00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Fisheries College, Guangdong Ocean University
- Contact
- Xinghua Lin, linxinghua97@163.com
- Sequence author(s)
- Changxu Tian, Xinghua Lin, Yang Huang, Huapu Chen, Dongneng Jiang, Hongjuan Shi, Siping Deng, Tianli Wu, Yulei Zhang, Mouyan Jiang, Tao Du, Chunhua Zhu, Guangli Li
- Released Date
- 2021-09-28
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- WTDBG V1
Canu v1.5 - Sequencing & coverage
- PacBio 126.0
HI-C 170.0 - Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Xinghua Lin, et al. Chromosomal-Level Genome Assembly of Silver Sillago (Sillago sihama). Genome Biology and Evolution. 2020, 13(2).
Statistics of Genome Assembly
| Genome size (bp) | 521,635,430 |
| GC content | 44.66% |
| Genome sequence No. | 470 |
| Maximum genome sequence length (bp) | 28,013,376 |
| Minimum genome sequence length (bp) | 2,475 |
| Average genome sequence length (bp) | 1,109,863 |
| Genome sequence N50 (bp) | 21,469,626 |
| Genome sequence N90 (bp) | 15,646,667 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 23,868 | 23,868 |