- Scientific Name
- Setaria italica
- Common Names
- foxtail millet; Chaetochloa italica, Panicum italicum, Pennisetum macrochaetum, Setaria viridis subsp. italica
- Bioproject
- PRJCA047633
- Biosample
- SAMC5992319
- Accession No.
- GWHHAFL00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR2217852
- GVM variations of the species
- 25,727,368 (SNP), 4,277,814 (Indel)
- Submitter Organization
- Houji laboratory in Shanxi Province, Shanxi Agricultural University
- Contact
- Zhaosheng Kong(zskong@sxau.edu.cn)
- Sequence author(s)
- Shuansuo Wang, Hui Zhang
- Released Date
- 2026-06-06
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- HifiAsm 0.20.0-r639
- Sequencing & coverage
- PacBio HiFi 70
ONT 165
MGI 126 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 424,513,751 |
| GC content | 46.23% |
| Chromosomes sequence No. | 9 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 54,626 | 54,626 |
| Total | 54,626 | 54,626 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 5,896 | 5,896 |
| chr2 | 7,082 | 7,082 |
| chr3 | 6,673 | 6,673 |
| chr4 | 4,906 | 4,906 |
| chr5 | 7,186 | 7,186 |
| chr6 | 4,159 | 4,159 |
| chr7 | 5,391 | 5,391 |
| chr8 | 4,375 | 4,375 |
| chr9 | 8,958 | 8,958 |
| Total | 54,626 | 54,626 |