- Scientific Name
- Ailuropoda melanoleuca
- Common Names
- giant panda;
- Bioproject
- PRJCA001903
- Biosample
- SAMC113654
- Accession No.
- GWHACDL00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR084609, CRR084607, CRR084608, CRR084605, CRR084616, more
- GVM variations of the species
- 11,820,056 (SNP), 2,544,981 (Indel)
- Submitter Organization
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences
- Contact
- Huizhong Fan(fanhuizhong@ioz.ac.cn), Yibo Hu(ybhu@ioz.ac.cn)
- Sequence author(s)
- Huizhong Fan, Yibo Hu
- Released Date
- 2020-03-27
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Scaff10X Seq-2017
- Sequencing & coverage
- Illumina HiSeq X Ten 82.0
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Huizhong Fan, et al. Chromosome-level genome assembly for giant panda provides novel insights into Carnivora chromosome evolution. Genome Biology. 2019, 20(1):267.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHACDL00000000 | - | Giant panda | Draft genome in chromosome level | 2020-03-27 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 2,444,060,653 |
| GC content | 41.69% |
| Chromosomes sequence No. | 21 |
| Genome sequence No. | 77,287 |
| Maximum genome sequence length (bp) | 212,770,937 |
| Minimum genome sequence length (bp) | 259 |
| Average genome sequence length (bp) | 31,623 |
| Genome sequence N50 (bp) | 129,245,720 |
| Genome sequence N90 (bp) | 38,124,791 |