Genome Warehouse

Scientific Name: Sus scrofa domesticus
Common Names: domestic pig; Sus domestica, Sus domesticus, Sus scrofa domestica
Bioproject: PRJCA002378
Biosample: SAMC146519
Accession No.: GWHACDT00000000
GWH reannotation accession: -
GSA raw reads: CRR803936, CRR803937, CRR803935
GVM variations of the species: -
Submitter Organization: State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences
Contact: Cui-Ping Huang, huangcp026@gmail.com
Sequence author(s): Cui-Ping Huang, Hai-Bing Xie Xie
Released Date: 2020-04-10
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: FALCON 1.8.7
Sequencing & coverage: Pacbio Sequel 243.3
Illumina Hiseq Xten 171.0
Bionano 147.3
Hi-C 333.9
Download: DNA GFF RNA CDS Protein
Publication(s): Haibing Xie, et al. African Suid Genomes Provide Insights into the Local Adaptation to DiverseAfrican Environments. Molecular Biology and Evolution. 2022, 39(12).

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHACDT00000000	-	DNSE_1.0	Draft genome in chromosome level	2020-04-10	DNA GFF RNA CDS Protein

Genome size (bp)	2,648,650,142
GC content	42.33%
Chromosomes sequence No.	19
Genome sequence No.	3,290
Maximum genome sequence length (bp)	284,845,474
Minimum genome sequence length (bp)	1,004
Average genome sequence length (bp)	805,061
Genome sequence N50 (bp)	137,346,382
Genome sequence N90 (bp)	56,687,750

Annotation of Whole Genome Assembly

Annotation Details