Genome Warehouse

Scientific Name: Phacochoerus africanus
Common Names: warthog; Common warthog;
Bioproject: PRJCA002378
Biosample: SAMC146517
Accession No.: GWHACEZ00000000
GWH reannotation accession: -
GSA raw reads: CRR363283, CRR363280, CRR363281, CRR363282
GVM variations of the species: -
Submitter Organization: State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences
Contact: Hai-Bing Xie(xiehb@mail.kiz.ac.cn)
Sequence author(s): Hai-Bing Xie
Released Date: 2020-04-27
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: Wtdbg2 2.3
Sequencing & coverage: Nanopore PromethION 281.71
Illumina NovaSeq 6000 263.27
Download: DNA GFF RNA CDS Protein
Reannotation Download: -
Publication(s): Haibing Xie, et al. African Suid Genomes Provide Insights into the Local Adaptation to DiverseAfrican Environments. Molecular Biology and Evolution. 2022, 39(12).

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHACEZ00000000	-	Wart_1.0	Draft genome in chromosome level	2020-04-27	DNA GFF RNA CDS Protein

Genome size (bp)	2,453,766,712
GC content	42.22%
Chromosomes sequence No.	19
Genome sequence No.	21
Maximum genome sequence length (bp)	278,089,002
Minimum genome sequence length (bp)	1,242,734
Average genome sequence length (bp)	116,846,034
Genome sequence N50 (bp)	138,295,081
Genome sequence N90 (bp)	68,747,891

Annotation of Whole Genome Assembly

Annotation Details