Genome Warehouse

Scientific Name: Potamochoerus porcus
Common Names: red river hog;
Bioproject: PRJCA002378
Biosample: SAMC146518
Accession No.: GWHACFA00000000
GWH reannotation accession: -
GSA raw reads: CRR363276, CRR363277, CRR363278, CRR363279
GVM variations of the species: -
Submitter Organization: State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences
Contact: Hai-Bing Xie, xiehb@mail.kiz.ac.cn
Sequence author(s): Hai-Bing Xie
Released Date: 2020-04-27
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: Wtdbg2 2.3
Sequencing & coverage: Nanopore PromethION 291.93
Illumina NovaSeq 6000 330.34
Download: DNA GFF RNA CDS Protein
Publication(s): Haibing Xie, et al. African Suid Genomes Provide Insights into the Local Adaptation to DiverseAfrican Environments. Molecular Biology and Evolution. 2022, 39(12).

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHACFA00000000	-	River_1.0	Draft genome in chromosome level	2020-04-27	DNA GFF RNA CDS Protein

Genome size (bp)	2,457,697,124
GC content	42.03%
Chromosomes sequence No.	19
Genome sequence No.	21
Maximum genome sequence length (bp)	278,271,656
Minimum genome sequence length (bp)	1,949,307
Average genome sequence length (bp)	117,033,196
Genome sequence N50 (bp)	139,403,444
Genome sequence N90 (bp)	70,605,690

Annotation of Whole Genome Assembly

Annotation Details