- Scientific Name
- Oryza meyeriana var. granulata
- Common Names
- Oryza granulata
- Bioproject
- PRJCA000888
- Biosample
- SAMC042921
- Accession No.
- GWHAAEL00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Ministry of Education Key Laboratory of Agriculture Biodiversity for Plant Disease Management, Yunnan Agricultural University
- Contact
- Rui Yang, yangruikm@qq.com
- Sequence author(s)
- Rui Yang
- Released Date
- 2018-05-26
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- Canu 1.0
- Sequencing & coverage
- Illumina HiSeq 2500 102.0
PacBio single-molecule real-time (SMRT) 21.0 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Zhigang Wu, et al. De novo genome assembly of Oryza granulata reveals rapid genome expansion and adaptive evolution. Communications biology. 2018, 1:84.
Statistics of Genome Assembly
| Genome size (bp) | 776,957,456 |
| GC content | 46.32% |
| Contig sequence No. | 4,618 |
| Maximum contig sequence length (bp) | 1,587,995 |
| Minimum contig sequence length (bp) | 2,000 |
| Average contig sequence length (bp) | 168,245 |
| Contig N50 (bp) | 262,045 |
| Contig N90 (bp) | 75,226 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 52,499 | 52,499 |