Genome Warehouse

Scientific Name: Oryza granulata
Common Names: Oryza granulata
Bioproject: PRJCA000888
Biosample: SAMC042921
Accession No.: GWHAAEL00000000
GWH reannotation accession: -
GSA raw reads: -
GVM variations of the species: -
Submitter Organization: Ministry of Education Key Laboratory of Agriculture Biodiversity for Plant Disease Management, Yunnan Agricultural University
Contact: Rui Yang, yangruikm@qq.com
Sequence author(s): Rui Yang
Released Date: 2018-05-26
Assembly Level: Draft genome in contig level
Genome Representation: Full Genome
Assembly method: Canu 1.0
Sequencing & coverage: Illumina HiSeq 2500 102.0
PacBio single-molecule real-time (SMRT) 21.0
Download: DNA GFF RNA Protein
Publication(s): Zhigang Wu, et al. De novo genome assembly of Oryza granulata reveals rapid genome expansion and adaptive evolution. Communications biology. 2018, 1:84.

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHAAEL00000000	-	Oryza granulata, whole genome sequencing	Draft genome in contig level	2018-05-26	DNA GFF RNA Protein

Genome size (bp)	776,957,456
GC content	46.32%
Contig sequence No.	4,618
Maximum contig sequence length (bp)	1,587,995
Minimum contig sequence length (bp)	2,000
Average contig sequence length (bp)	168,245
Contig N50 (bp)	262,045
Contig N90 (bp)	75,226

Annotation of Whole Genome Assembly

	Protein	Total
Total	52,499	52,499