- Scientific Name
- Vernicia fordii
- Common Names
- tung oil tree; Aleurites fordii
- Bioproject
- PRJCA000669
- Biosample
- SAMC019114
- Accession No.
- GWHAAEU00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Science
- Contact
- Qiang Lin, linq@big.ac.cn
- Sequence author(s)
- Qiang Lin, Shiyou Lv, Peng Cui, Songnian Hu
- Released Date
- 2019-01-21
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo2 r240
SSPACE v1.2 - Sequencing & coverage
- Illumina HiSeq 2000 100.0
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Peng Cui, et al. Tung Tree (Vernicia fordii, Hemsl.) Genome and Transcriptome Sequencing Reveals Co-Ordinate Up-Regulation of Fatty Acid β-Oxidation and Triacylglycerol Biosynthesis Pathways During Eleostearic Acid Accumulation in Seeds. Plant and Cell Physiology. 2018, 59(10): 1990- 2003.
Statistics of Genome Assembly
| Genome size (bp) | 1,176,320,429 |
| GC content | 34.03% |
| Scaffold sequence No. | 20,614 |
| Maximum scaffold sequence length (bp) | 3,423,127 |
| Minimum scaffold sequence length (bp) | 999 |
| Average scaffold sequence length (bp) | 57,064 |
| Scaffold N50 (bp) | 474,926 |
| Scaffold N90 (bp) | 116,880 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 60,893 | 60,893 |