- Scientific Name
- Camellia sinensis
- Common Names
- black tea; Thea sinensis
- Bioproject
- PRJCA003090
- Biosample
- SAMC273049
- Accession No.
- GWHASIV00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University
- Contact
- Shuai Chen, chens1209@163.com
- Sequence author(s)
- Xingtan Zhang, Shuai Chen
- Released Date
- 2021-02-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- CANU v1.9
- Sequencing & coverage
- PacBio 114.0
- Download
- DNA GFF RNA Protein
- Publication(s)
- Xingtan Zhang, et al. Haplotype-resolved genome assembly provides insights into evolutionary history ofthe tea plant Camellia sinensis. Nature Genetics. 2021, 53(8): 1250-9.
Statistics of Genome Assembly
| Genome size (bp) | 3,062,881,361 |
| GC content | 38.51% |
| Chromosomes sequence No. | 15 |
| Genome sequence No. | 163 |
| Maximum genome sequence length (bp) | 263,612,798 |
| Minimum genome sequence length (bp) | 1,248 |
| Average genome sequence length (bp) | 18,790,683 |
| Genome sequence N50 (bp) | 213,467,978 |
| Genome sequence N90 (bp) | 141,162,172 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 45,745 | 45,745 |
| Others | 156 | 156 |
| Total | 45,901 | 45,901 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,195 | 4,195 |
| chr10 | 2,732 | 2,732 |
| chr11 | 2,362 | 2,362 |
| chr12 | 2,313 | 2,313 |
| chr13 | 2,623 | 2,623 |
| chr14 | 2,705 | 2,705 |
| chr15 | 2,072 | 2,072 |
| chr2 | 3,559 | 3,559 |
| chr3 | 3,476 | 3,476 |
| chr4 | 3,802 | 3,802 |
| chr5 | 3,167 | 3,167 |
| chr6 | 3,465 | 3,465 |
| chr7 | 3,220 | 3,220 |
| chr8 | 2,867 | 2,867 |
| chr9 | 3,187 | 3,187 |
| Others | 156 | 156 |
| Total | 45,901 | 45,901 |