logo
Advanced

  • Secale cereale
  • Genome assembly of Weining V1
    • Scientific Name
    Secale cereale
    Common Names
    rye; Secale cereale subsp. cereale
    Bioproject
    PRJCA003934
    Biosample
    SAMC290508
    Accession No.
    GWHASIY00000000
    GWH reannotation accession
    -
    GSA raw reads
    -
    GVM variations of the species
    -
    Submitter Organization
    College of Agronomy, Henan Agricultural University
    Contact
    Li Guangwei, wheatwill@163.com
    Sequence author(s)
    Li Guangwei
    Released Date
    2020-12-22
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Partial Genome ( Nuclear )
    Assembly method
    WTDBG V1
    Sequencing & coverage
    PacBio 62.0
    Hi-C 70.0
    Illumina HiSeq 4000 54.0
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Guangwei Li, et al. A high-quality genome assembly highlights rye genomic characteristics andagronomically important genes. Nature Genetics. 2021, 53(4): 574-84.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHASIY00000000 - Genome assembly of Weining V1 Draft genome in chromosome level 2020-12-22 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 7,737,590,180
    GC content 45.90%
    Chromosomes sequence No. 7
    Genome sequence No. 8
    Maximum genome sequence length (bp) 1,140,537,383
    Minimum genome sequence length (bp) 484,400,598
    Average genome sequence length (bp) 967,198,773
    Genome sequence N50 (bp) 1,024,471,612
    Genome sequence N90 (bp) 940,967,580
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 42,165 42,165
    Others 1,763 1,763
    Total 43,928 43,928
    Annotation Details
    ChrID Protein Total
    chrR1 5,688 5,688
    chrR2 6,610 6,610
    chrR3 5,547 5,547
    chrR4 6,163 6,163
    chrR5 6,671 6,671
    chrR6 5,909 5,909
    chrR7 5,577 5,577
    Others 1,763 1,763
    Total 43,928 43,928