- Scientific Name
- Camellia sinensis
- Common Names
- black tea; Thea sinensis
- Bioproject
- PRJCA003090
- Biosample
- SAMC273049
- Accession No.
- GWHASIX00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University
- Contact
- Shuai Chen, chens1209@163.com
- Sequence author(s)
- Xingtan Zhang, Shuai Chen
- Released Date
- 2021-02-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- CANU v1.9
- Sequencing & coverage
- PacBio 114
- Download
- DNA GFF RNA Protein
- Publication(s)
- Xingtan Zhang, et al. Haplotype-resolved genome assembly provides insights into evolutionary history ofthe tea plant Camellia sinensis. Nature Genetics. 2021, 53(8): 1250-9.
Statistics of Genome Assembly
| Genome size (bp) | 5,991,822,019 |
| GC content | 38.56% |
| Chromosomes sequence No. | 30 |
| Genome sequence No. | 15,244 |
| Maximum genome sequence length (bp) | 277,054,969 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 393,061 |
| Genome sequence N50 (bp) | 206,237,967 |
| Genome sequence N90 (bp) | 169,189,133 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 52,620 | 52,620 |
| Total | 52,620 | 52,620 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,678 | 2,678 |
| chr10 | 1,597 | 1,597 |
| chr11 | 2,410 | 2,410 |
| chr12 | 1,547 | 1,547 |
| chr13 | 2,276 | 2,276 |
| chr14 | 1,210 | 1,210 |
| chr15 | 1,731 | 1,731 |
| chr16 | 1,395 | 1,395 |
| chr17 | 2,132 | 2,132 |
| chr18 | 1,605 | 1,605 |
| chr19 | 1,751 | 1,751 |
| chr2 | 2,204 | 2,204 |
| chr20 | 1,361 | 1,361 |
| chr21 | 1,423 | 1,423 |
| chr22 | 1,366 | 1,366 |
| chr23 | 1,586 | 1,586 |
| chr24 | 1,227 | 1,227 |
| chr25 | 1,679 | 1,679 |
| chr26 | 1,260 | 1,260 |
| chr27 | 1,736 | 1,736 |
| chr28 | 1,427 | 1,427 |
| chr29 | 1,353 | 1,353 |
| chr3 | 2,299 | 2,299 |
| chr30 | 1,089 | 1,089 |
| chr4 | 1,977 | 1,977 |
| chr5 | 2,132 | 2,132 |
| chr6 | 1,772 | 1,772 |
| chr7 | 2,470 | 2,470 |
| chr8 | 1,791 | 1,791 |
| chr9 | 2,136 | 2,136 |
| Total | 52,620 | 52,620 |