- Scientific Name
- Gastrodia elata
- Common Names
- -
- Bioproject
- PRJCA000931
- Biosample
- SAMC044637
- Accession No.
- GWHAAEX00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR032179, CRR032182, CRR032181, CRR032180
- GVM variations of the species
- -
- Submitter Organization
- -, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences
- Contact
- Yuan Yuan(y_yuan0732@163.com)
- Sequence author(s)
- Yuan Yuan
- Released Date
- 2018-08-16
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- AllPaths 44080
- Sequencing & coverage
- Illumina HiSeq 2500 150.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Yuan Yuan, et al. The Gastrodia elata genome provides insights into plant adaptation to heterotrophy. Nature Communications. 2018, 9(1): 1615.
Statistics of Genome Assembly
| Genome size (bp) | 1,061,091,640 |
| GC content | 34.52% |
| Scaffold sequence No. | 3,779 |
| Maximum scaffold sequence length (bp) | 24,690,109 |
| Minimum scaffold sequence length (bp) | 892 |
| Average scaffold sequence length (bp) | 280,786 |
| Scaffold N50 (bp) | 4,911,943 |
| Scaffold N90 (bp) | 1,349,508 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 18,969 | 18,969 |