- Scientific Name
- Persea americana
- Common Names
- avocado; Laurus persea, Persea americana var. tolimanensis, Persea gratissima, Persea tolimanensis
- Bioproject
- PRJCA077286
- Biosample
- SAMC8790662
- Accession No.
- GWHKEWF00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR3765263
- GVM variations of the species
- -
- Submitter Organization
- hainan university, Hainan University
- Contact
- junhao Ye(wy1806548281@163.com)
- Sequence author(s)
- Minqiang Tang, junhao Ye
- Released Date
- 2026-10-20
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm v0.19.5
- Sequencing & coverage
- PacBio HiFi 30
Illumina NovaSeq 6000 30 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 870,507,341 |
| GC content | 39.65% |
| Chromosomes sequence No. | 12 |
| Genome sequence No. | 307 |
| Maximum genome sequence length (bp) | 102,721,105 |
| Minimum genome sequence length (bp) | 10,000 |
| Average genome sequence length (bp) | 2,835,529 |
| Genome sequence N50 (bp) | 79,617,558 |
| Genome sequence N90 (bp) | 51,097,880 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Chromosome | 49,787 | 0 | 49,787 |
| Others | 490 | 4,522 | 5,012 |
| Total | 50,277 | 4,522 | 54,799 |
Annotation Details
| ChrID | Protein | Others | Total |
|---|---|---|---|
| chr1 | 6,240 | 0 | 6,240 |
| chr10 | 2,726 | 0 | 2,726 |
| chr11 | 2,970 | 0 | 2,970 |
| chr12 | 2,819 | 0 | 2,819 |
| chr2 | 5,889 | 0 | 5,889 |
| chr3 | 5,838 | 0 | 5,838 |
| chr4 | 3,778 | 0 | 3,778 |
| chr5 | 4,897 | 0 | 4,897 |
| chr6 | 3,458 | 0 | 3,458 |
| chr7 | 4,635 | 0 | 4,635 |
| chr8 | 3,584 | 0 | 3,584 |
| chr9 | 2,953 | 0 | 2,953 |
| Others | 490 | 4,522 | 5,012 |
| Total | 50,277 | 4,522 | 54,799 |