- Scientific Name
- Ananas bracteatus
- Common Names
- red pineapple, wild pineapple; Ananas bracteatus, Ananas bracteatus var. bracteatus, Ananas fritzmuelleri, Ananas sagenaria
- Bioproject
- PRJCA001155
- Biosample
- SAMC050969
- Accession No.
- GWHAAFI00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University
- Contact
- Liyu Chen(lychen@fafu.edu.cn), Ray Ming(rayming@illinois.edu), Xingtan Zhang(zhangxt@fafu.edu.cn)
- Sequence author(s)
- Liyu Chen, Ray Ming, Xingtan Zhang
- Released Date
- 2019-03-04
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- CANU 1.7
3D-DNA 2018-09-29
ALLHiC 2018-10-17 - Sequencing & coverage
- PacBio 42.0
Illumina HiSeq 4000 120.0 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 513,235,391 |
| GC content | 38.71% |
| Chromosomes sequence No. | 25 |
| Genome sequence No. | 103 |
| Maximum genome sequence length (bp) | 27,132,755 |
| Minimum genome sequence length (bp) | 18,368 |
| Average genome sequence length (bp) | 4,982,868 |
| Genome sequence N50 (bp) | 20,178,443 |
| Genome sequence N90 (bp) | 13,240,063 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Chromosome | 26,393 | 24 | 26,417 |
| Others | 2,992 | 5 | 2,997 |
| Total | 29,385 | 29 | 29,414 |
Annotation Details
| ChrID | Protein | Others | Total |
|---|---|---|---|
| chr1 | 884 | 0 | 884 |
| chr10 | 556 | 0 | 556 |
| chr11 | 1,454 | 1 | 1,455 |
| chr12 | 589 | 0 | 589 |
| chr13 | 1,272 | 1 | 1,273 |
| chr14 | 1,185 | 0 | 1,185 |
| chr15 | 981 | 0 | 981 |
| chr16 | 882 | 2 | 884 |
| chr17 | 1,218 | 1 | 1,219 |
| chr18 | 1,042 | 0 | 1,042 |
| chr19 | 1,509 | 3 | 1,512 |
| chr2 | 594 | 0 | 594 |
| chr20 | 1,042 | 1 | 1,043 |
| chr21 | 886 | 1 | 887 |
| chr22 | 820 | 2 | 822 |
| chr23 | 797 | 0 | 797 |
| chr24 | 1,123 | 0 | 1,123 |
| chr25 | 1,200 | 3 | 1,203 |
| chr3 | 884 | 2 | 886 |
| chr4 | 837 | 0 | 837 |
| chr5 | 1,050 | 0 | 1,050 |
| chr6 | 1,016 | 2 | 1,018 |
| chr7 | 1,887 | 1 | 1,888 |
| chr8 | 1,129 | 4 | 1,133 |
| chr9 | 1,556 | 0 | 1,556 |
| Others | 2,992 | 5 | 2,997 |
| Total | 29,385 | 29 | 29,414 |