- Scientific Name
- human vaginal metagenome
- Common Names
- -
- Bioproject
- PRJCA003712
- Biosample
- SAMC273212
- Accession No.
- GWHAZGP00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- The Institute of Metagenomics Research, BGI
- Contact
- Lilan Hao(haolilan@genomics.cn)
- Sequence author(s)
- Zhuye Jie
- Released Date
- 2021-02-28
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- metaSPAdes v.3.13.0
MetaBAT2 v2.12.1 - Sequencing & coverage
- BGISEQ-500 30
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Zhuye Jie, et al. Life History Recorded in the Vagino-cervical Microbiome Along with Multi-omes. Genomics, Proteomics & Bioinformatics. 2022, 20(2): 304-321.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAZGP00000000 | - | va18_RDPYD18079336_A | Draft genome in contig level | 2021-02-28 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 3,918,934 |
| GC content | 39.56% |
| Contig sequence No. | 4,728 |
| Maximum contig sequence length (bp) | 76,847 |
| Minimum contig sequence length (bp) | 201 |
| Average contig sequence length (bp) | 829 |
| Contig N50 (bp) | 5,324 |
| Contig N90 (bp) | 262 |