- Scientific Name
- Medicago polymorpha
- Common Names
- -
- Bioproject
- PRJCA003129
- Biosample
- SAMC202562
- Accession No.
- GWHANWO00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR153177, CRR153178, CRR153179
- GVM variations of the species
- -
- Submitter Organization
- College of Horticulture and Plant Protection, Yangzhou University
- Contact
- Jiawen Cui, jiawencui@126.com
- Sequence author(s)
- Biao Jin, Zhenwu Wei, Jiawen Cui, Zhaogeng Lu
- Released Date
- 2020-12-12
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- FALCON 2019-7
- Sequencing & coverage
- PacBio 100.0
- Download
- DNA GFF RNA Protein
- Publication(s)
- Jiawen Cui, et al. The genome of Medicago polymorpha provides insights into its edibility andnutritional value as a vegetable and forage legume. Horticulture Research. 2021, 8.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHANWO00000000 | - | Medicago polymorpha | Draft genome in scaffold level | 2020-11-05 |
DNA
GFF
RNA
Protein
|
| GWHANWO00000000.1 | - | Medicago polymorpha | Draft genome in scaffold level | 2020-12-12 |
DNA
GFF
RNA
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 457,531,409 |
| GC content | 33.60% |
| Chromosomes sequence No. | 7 |
| Genome sequence No. | 269 |
| Maximum genome sequence length (bp) | 93,525,394 |
| Minimum genome sequence length (bp) | 9,607 |
| Average genome sequence length (bp) | 1,700,860 |
| Genome sequence N50 (bp) | 57,718,482 |
| Genome sequence N90 (bp) | 42,472,796 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 35,038 | 35,038 |
| Others | 1,047 | 1,047 |
| Total | 36,085 | 36,085 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,772 | 4,772 |
| chr2 | 5,136 | 5,136 |
| chr3 | 8,073 | 8,073 |
| chr4 | 5,063 | 5,063 |
| chr5 | 4,410 | 4,410 |
| chr6 | 4,428 | 4,428 |
| chr7 | 3,156 | 3,156 |
| Others | 1,047 | 1,047 |
| Total | 36,085 | 36,085 |