- Scientific Name
- Phytophthora capsici
- Common Names
- -
- Bioproject
- PRJCA004076
- Biosample
- SAMC296262
- Accession No.
- GWHAZID00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Department of Plant Protection, Nanjing Agricultural University
- Contact
- Wenwu Ye, yeww@njau.edu.cn
- Sequence author(s)
- Yongli Qiao, Jinxia Shi, Dongfang Ma, Junliang Yin, Wenwu Ye, Zhichao Zhang
- Released Date
- 2020-12-21
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- Canu v1.5
- Sequencing & coverage
- Oxford Nanopore 116.0
Illumina HiSeq X Ten 69.0 - Download
-
DNA
GFF
RNA
Protein
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 100,526,817 |
| GC content | 50.82% |
| Scaffold sequence No. | 194 |
| Maximum scaffold sequence length (bp) | 4,147,862 |
| Minimum scaffold sequence length (bp) | 11,508 |
| Average scaffold sequence length (bp) | 518,179 |
| Scaffold N50 (bp) | 1,013,378 |
| Scaffold N90 (bp) | 317,879 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 26,040 | 26,040 |