- Scientific Name
- Solanum lycopersicum
- Common Names
- tomato; Lycopersicon esculentum, Lycopersicon esculentum var. esculentum, Solanum esculentum, Solanum lycopersicum var. humboldtii
- Bioproject
- PRJCA004585
- Biosample
- SAMC344311
- Accession No.
- GWHBAUD00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR275052
- GVM variations of the species
- 26,938,825 (SNP), 3,724,480 (Indel)
- Submitter Organization
- College of Horticulture, China Agricultural University
- Contact
- Tao Lin, lintao35@cau.edu.cn
- Sequence author(s)
- Tao Lin
- Released Date
- 2022-01-06
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- CANU version1.3
- Sequencing & coverage
- PacBio 97.61
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Xiao Su, et al. A high-continuity and annotated tomato reference genome. BMC Genomics. 2021, 22.
Statistics of Genome Assembly
| Genome size (bp) | 799,091,949 |
| GC content | 34.59% |
| Chromosomes sequence No. | 12 |
| Genome sequence No. | 83 |
| Maximum genome sequence length (bp) | 91,866,112 |
| Minimum genome sequence length (bp) | 16,018 |
| Average genome sequence length (bp) | 9,627,614 |
| Genome sequence N50 (bp) | 66,166,780 |
| Genome sequence N90 (bp) | 54,674,139 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Total | |
|---|---|---|---|
| Chromosome | 29,723 | 3,839 | 33,562 |
| Others | 666 | 156 | 822 |
| Total | 30,389 | 3,995 | 34,384 |
Annotation Details
| ChrID | Protein | Pseudogene | Total |
|---|---|---|---|
| chr1 | 3,609 | 438 | 4,047 |
| chr10 | 2,215 | 366 | 2,581 |
| chr11 | 1,998 | 345 | 2,343 |
| chr12 | 2,132 | 343 | 2,475 |
| chr2 | 3,021 | 244 | 3,265 |
| chr3 | 3,059 | 260 | 3,319 |
| chr4 | 2,516 | 316 | 2,832 |
| chr5 | 2,060 | 340 | 2,400 |
| chr6 | 2,507 | 232 | 2,739 |
| chr7 | 2,231 | 285 | 2,516 |
| chr8 | 2,157 | 289 | 2,446 |
| chr9 | 2,218 | 381 | 2,599 |
| Others | 666 | 156 | 822 |
| Total | 30,389 | 3,995 | 34,384 |