- Scientific Name
- Macadamia integrifolia
- Common Names
- macadamia nut;
- Bioproject
- PRJCA004595
- Biosample
- SAMC346563
- Accession No.
- GWHBAUK00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University
- Contact
- Jishan Lin, linjishan2006@163.com
- Sequence author(s)
- Jishan Lin
- Released Date
- 2021-08-27
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- CANU 1.9
- Sequencing & coverage
- PacBio 100.0
- Download
-
DNA
GFF
RNA
Protein
- Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBAUK00000000 | - | Macadamia genome | Draft genome in chromosome level | 2021-08-27 |
DNA
GFF
RNA
Protein
|
| GWHBAUK00000000.1 | - | Mi.v1.fasta | Draft genome in chromosome level | 2021-11-11 |
DNA
GFF
RNA
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 794,132,030 |
| GC content | 39.18% |
| Chromosomes sequence No. | 14 |
| Genome sequence No. | 26 |
| Maximum genome sequence length (bp) | 72,930,807 |
| Minimum genome sequence length (bp) | 3,091 |
| Average genome sequence length (bp) | 30,543,540 |
| Genome sequence N50 (bp) | 56,508,535 |
| Genome sequence N90 (bp) | 49,140,984 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 27,148 | 27,148 |
| Total | 27,148 | 27,148 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 1,826 | 1,826 |
| chr10 | 1,694 | 1,694 |
| chr11 | 1,891 | 1,891 |
| chr12 | 2,144 | 2,144 |
| chr13 | 1,751 | 1,751 |
| chr14 | 2,037 | 2,037 |
| chr2 | 1,503 | 1,503 |
| chr3 | 2,020 | 2,020 |
| chr4 | 2,080 | 2,080 |
| chr5 | 1,796 | 1,796 |
| chr6 | 2,188 | 2,188 |
| chr7 | 2,644 | 2,644 |
| chr8 | 1,959 | 1,959 |
| chr9 | 1,615 | 1,615 |
| Total | 27,148 | 27,148 |