- Scientific Name
- Pogostemon cablin
- Common Names
- patchouli; Pogostemon patchouly
- Bioproject
- PRJCA004982
- Biosample
- SAMC355642
- Accession No.
- GWHBAZF00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR283191
- GVM variations of the species
- -
- Submitter Organization
- Institute of Medicinal Plant Physiology and Ecology, Guangzhou University of Chinese Medicine
- Contact
- Shen Yanting, shenyanting@gzucm.edu.cn
- Sequence author(s)
- Shen Yanting
- Released Date
- 2022-05-28
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu v2.0
- Sequencing & coverage
- PacBio 160.0
- Download
- DNA GFF RNA Protein
- Publication(s)
- Yanting Shen, et al. Chromosome-level and haplotype-resolved genome provides insight into the tetraploid hybrid origin of patchouli. Nature Communications. 2022, 13: 3511.
Statistics of Genome Assembly
| Genome size (bp) | 1,941,516,370 |
| GC content | 34.46% |
| Chromosomes sequence No. | 63 |
| Organellas sequence No. | 1 |
| Genome sequence No. | 988 |
| Maximum genome sequence length (bp) | 50,970,915 |
| Minimum genome sequence length (bp) | 1,490 |
| Average genome sequence length (bp) | 1,965,098 |
| Genome sequence N50 (bp) | 30,325,545 |
| Genome sequence N90 (bp) | 21,136,850 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 130,180 | 130,180 |
| Chloroplast | 79 | 79 |
| Others | 2,149 | 2,149 |
| Total | 132,408 | 132,408 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chrA1 | 2,809 | 2,809 |
| chrA10 | 1,748 | 1,748 |
| chrA11 | 2,030 | 2,030 |
| chrA12 | 1,835 | 1,835 |
| chrA13 | 1,881 | 1,881 |
| chrA14 | 1,758 | 1,758 |
| chrA15 | 2,375 | 2,375 |
| chrA16 | 2,324 | 2,324 |
| chrA17 | 2,191 | 2,191 |
| chrA18 | 2,158 | 2,158 |
| chrA19 | 1,786 | 1,786 |
| chrA2 | 2,813 | 2,813 |
| chrA20 | 1,775 | 1,775 |
| chrA21 | 1,896 | 1,896 |
| chrA22 | 1,893 | 1,893 |
| chrA23 | 1,937 | 1,937 |
| chrA24 | 1,780 | 1,780 |
| chrA25 | 1,784 | 1,784 |
| chrA26 | 1,750 | 1,750 |
| chrA27 | 2,073 | 2,073 |
| chrA28 | 2,131 | 2,131 |
| chrA29 | 1,452 | 1,452 |
| chrA3 | 3,740 | 3,740 |
| chrA30 | 1,510 | 1,510 |
| chrA31 | 1,802 | 1,802 |
| chrA32 | 2,006 | 2,006 |
| chrA4 | 3,797 | 3,797 |
| chrA5 | 2,794 | 2,794 |
| chrA6 | 2,697 | 2,697 |
| chrA7 | 2,352 | 2,352 |
| chrA8 | 2,480 | 2,480 |
| chrA9 | 1,902 | 1,902 |
| chrB1 | 2,521 | 2,521 |
| chrB10 | 1,565 | 1,565 |
| chrB11 | 1,676 | 1,676 |
| chrB12 | 1,543 | 1,543 |
| chrB13 | 1,728 | 1,728 |
| chrB14 | 1,586 | 1,586 |
| chrB15 | 2,198 | 2,198 |
| chrB16 | 2,163 | 2,163 |
| chrB17 | 1,913 | 1,913 |
| chrB18 | 1,833 | 1,833 |
| chrB19 | 1,656 | 1,656 |
| chrB2 | 2,525 | 2,525 |
| chrB20 | 1,587 | 1,587 |
| chrB21 | 1,712 | 1,712 |
| chrB22 | 1,827 | 1,827 |
| chrB23 | 1,691 | 1,691 |
| chrB24 | 1,680 | 1,680 |
| chrB25 | 1,592 | 1,592 |
| chrB26 | 1,611 | 1,611 |
| chrB27 | 2,272 | 2,272 |
| chrB28 | 2,126 | 2,126 |
| chrB29 | 1,188 | 1,188 |
| chrB3 | 3,342 | 3,342 |
| chrB30 | 1,232 | 1,232 |
| chrB31 | 1,559 | 1,559 |
| chrB4 | 3,399 | 3,399 |
| chrB5 | 2,502 | 2,502 |
| chrB6 | 2,545 | 2,545 |
| chrB7 | 2,210 | 2,210 |
| chrB8 | 2,303 | 2,303 |
| chrB9 | 1,636 | 1,636 |
| Chloroplast | 79 | 79 |
| Others | 2,149 | 2,149 |
| Total | 132,408 | 132,408 |