- Scientific Name
- Taraxacum kok-saghyz
- Common Names
- -
- Bioproject
- PRJCA005187
- Biosample
- SAMC373586
- Accession No.
- GWHBCHF00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Horticulture, China Agricultural University
- Contact
- Tao Lin, lintao35@cau.edu.cn
- Sequence author(s)
- Tao Lin
- Released Date
- 2021-12-21
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- CANU 2.0
- Sequencing & coverage
- PacBio 100.0
- Download
- DNA GFF RNA Protein
- Publication(s)
- Tao Lin, et al. Extensive sequence divergence between reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum. Science China Life Sciences. 2021.
Statistics of Genome Assembly
| Genome size (bp) | 1,101,786,192 |
| GC content | 37.51% |
| Chromosomes sequence No. | 9 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Total | |
|---|---|---|---|
| Chromosome | 47,427 | 9,056 | 56,483 |
| Total | 47,427 | 9,056 | 56,483 |
Annotation Details
| ChrID | Protein | Pseudogene | Total |
|---|---|---|---|
| chr1 | 2,021 | 410 | 2,431 |
| chr2 | 6,686 | 1,354 | 8,040 |
| chr3 | 7,384 | 1,293 | 8,677 |
| chr4 | 6,499 | 1,231 | 7,730 |
| chr5 | 5,691 | 1,044 | 6,735 |
| chr6 | 4,228 | 848 | 5,076 |
| chr7 | 4,404 | 841 | 5,245 |
| chr8 | 4,992 | 915 | 5,907 |
| chr9 | 5,522 | 1,120 | 6,642 |
| Total | 47,427 | 9,056 | 56,483 |