- Scientific Name
- Capsicum
- Common Names
- peppers;
- Bioproject
- PRJCA000783
- Biosample
- SAMC026771
- Accession No.
- GWHAAAT00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- -, Hunan Vegetable Research Institute, Hunan Academy of Agricultural Sciences
- Contact
- Dong Li(dong.li@wiserice.com.cn), Xuexiao Zou(zouxuexiao428@163.com), Qingma Yan(yanqingmahn@163.com), Bingbing Wang(Bingbing.Wang@wiserice.com.cn), Xiongxiong Dai(xiongzhedai@126.com)
- Sequence author(s)
- Dong Li, Xuexiao Zou, Qingma Yan, Bingbing Wang, Xiongxiong Dai
- Released Date
- 2018-08-08
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- SOAPdenovo 2
- Sequencing & coverage
- Illumina HiSeq 2500 10.0
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Dong Li, et al. Pan-genome of cultivated pepper (Capsicum) and its use in gene presence–absence variation analyses. New Phytologist. 2018, 220(2):360-363.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAAAT00000000 | - | pepper_pan_novel_contigs.fasta | Draft genome in contig level | 2018-08-08 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 956,430,739 |
| GC content | 37.17% |
| Contig sequence No. | 610,292 |
| Maximum contig sequence length (bp) | 55,121 |
| Minimum contig sequence length (bp) | 500 |
| Average contig sequence length (bp) | 1,567 |
| Contig N50 (bp) | 2,257 |
| Contig N90 (bp) | 662 |