- Scientific Name
- Avicennia marina subsp. australasica
- Common Names
- Avicennia marina var. australasica
- Bioproject
- PRJCA004930
- Biosample
- SAMC353215
- Accession No.
- GWHBCJD00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Sun Yat-sen University
- Contact
- Xiao Feng(fengx25@mail2.sysu.edu.cn)
- Sequence author(s)
- Ziwen He
- Released Date
- 2022-04-27
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Supernova 2.0.1
3D-DNA 180922 - Sequencing & coverage
- 10X Genomics 104
Hi-C 399
short‑insert 459 - Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Ziwen He, et al. Evolution of coastal forests based on a full set of mangrove genomes. Nature Ecology & Evolution. 2022.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBCJD00000000 | - | Amarinaau_genome_v1 | Draft genome in chromosome level | 2022-04-27 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 493,608,553 |
| GC content | 33.74% |
| Genome sequence No. | 32,455 |
| Maximum genome sequence length (bp) | 21,734,316 |
| Minimum genome sequence length (bp) | 200 |
| Average genome sequence length (bp) | 15,209 |
| Genome sequence N50 (bp) | 13,597,731 |
| Genome sequence N90 (bp) | 17,108 |