- Scientific Name
- Avicennia rumphiana
- Common Names
- Avicennia marina var. rumphiana
- Bioproject
- PRJCA004930
- Biosample
- SAMC353221
- Accession No.
- GWHBCJH00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Sun Yat-sen University
- Contact
- Xiao Feng, fengx25@mail2.sysu.edu.cn
- Sequence author(s)
- Ziwen He
- Released Date
- 2022-04-27
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- Mecat2 mecat_20190314
- Sequencing & coverage
- PacBio 193
short‑insert 165 - Download
- DNA
- Publication(s)
- Ziwen He, et al. Evolution of coastal forests based on a full set of mangrove genomes. Nature Ecology & Evolution. 2022.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBCJH00000000 | - | Arumphiana_genome_v1 | Draft genome in scaffold level | 2022-04-27 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 470,605,700 |
| GC content | 33.37% |
| Scaffold sequence No. | 304 |
| Maximum scaffold sequence length (bp) | 21,144,767 |
| Minimum scaffold sequence length (bp) | 1,198 |
| Average scaffold sequence length (bp) | 1,548,045 |
| Scaffold N50 (bp) | 7,044,075 |
| Scaffold N90 (bp) | 3,641,341 |