- Scientific Name
- Avicennia germinans
- Common Names
- black mangrove; Avicennia nitida, Bontia germinans
- Bioproject
- PRJCA004930
- Biosample
- SAMC353222
- Accession No.
- GWHBCJI00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Sun Yat-sen University
- Contact
- Xiao Feng, fengx25@mail2.sysu.edu.cn
- Sequence author(s)
- Ziwen He
- Released Date
- 2022-04-27
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Supernova 2.0.1
3D-DNA 180922 - Sequencing & coverage
- 10X Genomics 102
Hi-C 214
short‑insert 120 - Download
- DNA
- Publication(s)
- Ziwen He, et al. Evolution of coastal forests based on a full set of mangrove genomes. Nature Ecology & Evolution. 2022.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBCJI00000000 | - | Agerminans_genome_v1 | Draft genome in chromosome level | 2022-04-27 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 656,668,437 |
| GC content | 34.38% |
| Genome sequence No. | 83,655 |
| Maximum genome sequence length (bp) | 23,219,080 |
| Minimum genome sequence length (bp) | 200 |
| Average genome sequence length (bp) | 7,850 |
| Genome sequence N50 (bp) | 16,432,937 |
| Genome sequence N90 (bp) | 2,769 |