- Scientific Name
- Pemphis acidula
- Common Names
- -
- Bioproject
- PRJCA004930
- Biosample
- SAMC353203
- Accession No.
- GWHBCKM00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Sun Yat-sen University
- Contact
- Xiao Feng, fengx25@mail2.sysu.edu.cn
- Sequence author(s)
- Ziwen He
- Released Date
- 2022-04-27
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Supernova 2.0.1
3D-DNA 180922 - Sequencing & coverage
- 10X Genomics 180
Hi-C 433
short‑insert 98 - Download
- DNA
- Publication(s)
- Ziwen He, et al. Evolution of coastal forests based on a full set of mangrove genomes. Nature Ecology & Evolution. 2022.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBCKM00000000 | - | Pacidula_genome_v1 | Draft genome in chromosome level | 2022-04-27 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 495,422,425 |
| GC content | 38.48% |
| Genome sequence No. | 29,020 |
| Maximum genome sequence length (bp) | 38,412,127 |
| Minimum genome sequence length (bp) | 200 |
| Average genome sequence length (bp) | 17,072 |
| Genome sequence N50 (bp) | 28,955,563 |
| Genome sequence N90 (bp) | 14,617 |