- Scientific Name
- Pongamia pinnata
- Common Names
- karumtree, pongam, poonga-oil-tree; Cytisus pinnatus, Millettia pinnata, Pongamia glabra
- Bioproject
- PRJCA004930
- Biosample
- SAMC353212
- Accession No.
- GWHBCKS00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Sun Yat-sen University
- Contact
- Xiao Feng, fengx25@mail2.sysu.edu.cn
- Sequence author(s)
- Ziwen He
- Released Date
- 2022-04-27
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- wtdbg2 2.5
3D-DNA 180922 - Sequencing & coverage
- PacBio 114
Hi-C 95
short‑insert 52 - Download
- DNA
- Publication(s)
- Ziwen He, et al. Evolution of coastal forests based on a full set of mangrove genomes. Nature Ecology & Evolution. 2022.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBCKS00000000 | - | Ppinnata_genome_v1 | Draft genome in chromosome level | 2022-04-27 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 1,074,146,816 |
| GC content | 32.30% |
| Genome sequence No. | 2,857 |
| Maximum genome sequence length (bp) | 128,019,943 |
| Minimum genome sequence length (bp) | 265 |
| Average genome sequence length (bp) | 375,970 |
| Genome sequence N50 (bp) | 88,490,272 |
| Genome sequence N90 (bp) | 66,632,634 |