Scientific Name
Pongamia pinnata
Common Names
karumtree, pongam, poonga-oil-tree; Cytisus pinnatus, Millettia pinnata, Pongamia glabra
Bioproject
PRJCA004930
Biosample
SAMC353212
Accession No.
GWHBCKS00000000
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
School of Life Sciences, Sun Yat-sen University
Contact
Xiao Feng, fengx25@mail2.sysu.edu.cn
Sequence author(s)
Ziwen He
Released Date
2022-04-27
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
wtdbg2 2.5
3D-DNA 180922
Sequencing & coverage
PacBio 114
Hi-C 95
short‑insert 52
Download
DNA
Publication(s)
Ziwen He, et al. Evolution of coastal forests based on a full set of mangrove genomes. Nature Ecology & Evolution. 2022.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHBCKS00000000 - Ppinnata_genome_v1 Draft genome in scaffold level 2022-04-27 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 1,074,146,816
GC content 32.30%
Genome sequence No. 2,857
Maximum genome sequence length (bp) 128,019,943
Minimum genome sequence length (bp) 265
Average genome sequence length (bp) 375,970
Genome sequence N50 (bp) 88,490,272
Genome sequence N90 (bp) 66,632,634