- Scientific Name
- Staphylococcus aureus
- Common Names
- Micrococcus aureus, Micrococcus pyogenes, Staphlococcus pyogenes citreus, Staphylococcus aureus subsp. anaerobius, Staphylococcus pyogenes aureus
- Bioproject
- PRJCA004763
- Biosample
- SAMC347601
- Accession No.
- GWHBCTK01000000
- GWH reannotation accession
- GWHRA_BCTK01000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Sir Run Run Shaw Hospital, Zhejiang University
- Contact
- Yan Chen(chenyan@zju.edu.cn)
- Sequence author(s)
- Yan Chen
- Released Date
- 2021-06-25
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- shovill v1
- Sequencing & coverage
- Illumina HiSeq Xten 100
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- Hemu Zhuang, et al. A random forest model based on core genome allelic profiles of MRSA forpenicillin plus potassium clavulanate susceptibility prediction. Microbial Genomics. 2021, 7(9).
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBCTK01000000 | GWHRA_BCTK01000000.1 | NASAAK150819 | Draft genome in contig level | 2021-06-25 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,890,753 |
| GC content | 32.71% |
| Contig sequence No. | 95 |
| Maximum contig sequence length (bp) | 242,773 |
| Minimum contig sequence length (bp) | 211 |
| Average contig sequence length (bp) | 30,429 |
| Contig N50 (bp) | 80,194 |
| Contig N90 (bp) | 23,462 |
Statistics of Genome Assembly
| Genome size (bp) | 2,890,753 |
| GC content | 32.71% |
| Contig sequence No. | 95 |
| Maximum contig sequence length (bp) | 242,773 |
| Minimum contig sequence length (bp) | 211 |
| Average contig sequence length (bp) | 30,429 |
| Contig N50 (bp) | 80,194 |
| Contig N90 (bp) | 23,462 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 2,778 | 59 | 17 | 1 | 95 | 117 | 3,067 |