- Scientific Name
- Carassius auratus red var.
- Common Names
- red crucian carp;
- Bioproject
- PRJCA001234
- Biosample
- SAMC056914
- Accession No.
- GWHAAIA00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Yunnan University
- Contact
- Jing Luo(jingluo@ynu.edu.cn)
- Sequence author(s)
- Jing Luo
- Released Date
- 2020-06-01
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- Wtdbg v1.1.006
BWA v0.7.10-r943-dirty
IrysView 2.5.1.29842
PBJelly 14.9.9 - Sequencing & coverage
- PacBio 75.0
Optical map 128.0
Hi-C 170.0
Illumina HiSeq 2000 53.0 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Jing Luo, et al. From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish. Science Advances. 2020, 6(22): eaaz7677.
Statistics of Genome Assembly
| Genome size (bp) | 1,639,403,616 |
| GC content | 37.63% |
| Scaffold sequence No. | 5,474 |
| Maximum scaffold sequence length (bp) | 11,063,794 |
| Minimum scaffold sequence length (bp) | 2,563 |
| Average scaffold sequence length (bp) | 299,489 |
| Scaffold N50 (bp) | 2,933,731 |
| Scaffold N90 (bp) | 96,045 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 43,144 | 43,144 |