Scientific Name
Staphylococcus aureus
Common Names
Micrococcus aureus, Micrococcus pyogenes, Staphlococcus pyogenes citreus, Staphylococcus aureus subsp. anaerobius, Staphylococcus pyogenes aureus
Bioproject
PRJCA004763
Biosample
SAMC347812
Accession No.
GWHBDBM01000000
GWH reannotation accession
GWHRA_BDBM01000000.1
GSA raw reads
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GVM variations of the species
-
Submitter Organization
Sir Run Run Shaw Hospital, Zhejiang University
Contact
Yan Chen, chenyan@zju.edu.cn
Sequence author(s)
Yan Chen
Released Date
2021-06-25
Assembly Level
Draft genome in contig level
Genome Representation
Full Genome
Assembly method
shovill v1
Sequencing & coverage
Illumina HiSeq Xten 100
Download
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein
Publication(s)
Hemu Zhuang, et al. A random forest model based on core genome allelic profiles of MRSA forpenicillin plus potassium clavulanate susceptibility prediction. Microbial Genomics. 2021, 7(9).
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHBDBM01000000 GWHRA_BDBM01000000.1 NASAAV151784 Draft genome in contig level 2021-06-25 DNA GFF RNA Protein
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein

Statistics of Genome Assembly

Genome size (bp) 2,856,101
GC content 32.75%
Contig sequence No. 45
Maximum contig sequence length (bp) 372,855
Minimum contig sequence length (bp) 202
Average contig sequence length (bp) 63,469
Contig N50 (bp) 245,335
Contig N90 (bp) 52,156

Statistics of Genome Assembly

Genome size (bp) 2,856,101
GC content 32.75%
Contig sequence No. 45
Maximum contig sequence length (bp) 372,855
Minimum contig sequence length (bp) 202
Average contig sequence length (bp) 63,469
Contig N50 (bp) 245,335
Contig N90 (bp) 52,156
Annotation of Whole Genome Assembly
Protein tRNA rRNA ncRNA Pseudogene Others Total
Total 2,743 59 13 1 82 67 2,965