Scientific Name
Staphylococcus aureus
Common Names
Micrococcus aureus, Micrococcus pyogenes, Staphlococcus pyogenes citreus, Staphylococcus aureus subsp. anaerobius, Staphylococcus pyogenes aureus
Bioproject
PRJCA004763
Biosample
SAMC347832
Accession No.
GWHBDCG01000000
GWH reannotation accession
GWHRA_BDCG01000000.1
GSA raw reads
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GVM variations of the species
-
Submitter Organization
Sir Run Run Shaw Hospital, Zhejiang University
Contact
Yan Chen, chenyan@zju.edu.cn
Sequence author(s)
Yan Chen
Released Date
2021-06-25
Assembly Level
Draft genome in contig level
Genome Representation
Full Genome
Assembly method
shovill v1
Sequencing & coverage
Illumina HiSeq Xten 100
Download
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein
Publication(s)
Hemu Zhuang, et al. A random forest model based on core genome allelic profiles of MRSA forpenicillin plus potassium clavulanate susceptibility prediction. Microbial Genomics. 2021, 7(9).
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHBDCG01000000 GWHRA_BDCG01000000.1 NASAAW151843 Draft genome in contig level 2021-06-25 DNA GFF RNA Protein
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein

Statistics of Genome Assembly

Genome size (bp) 2,987,311
GC content 32.72%
Contig sequence No. 98
Maximum contig sequence length (bp) 278,202
Minimum contig sequence length (bp) 231
Average contig sequence length (bp) 30,483
Contig N50 (bp) 115,279
Contig N90 (bp) 25,638

Statistics of Genome Assembly

Genome size (bp) 2,987,311
GC content 32.72%
Contig sequence No. 98
Maximum contig sequence length (bp) 278,202
Minimum contig sequence length (bp) 231
Average contig sequence length (bp) 30,483
Contig N50 (bp) 115,279
Contig N90 (bp) 25,638
Annotation of Whole Genome Assembly
Protein tRNA rRNA ncRNA Pseudogene Others Total
Total 2,935 60 11 1 99 120 3,226