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  • Echinochloa oryzicola
  • eo_v2
    • Scientific Name
    Echinochloa oryzicola
    Common Names
    late barnyard grass; Echinochloa crus-galli var. oryzicola, Echinochloa crusgalli var. oryzicola
    Bioproject
    PRJCA003883
    Biosample
    SAMC393330
    Accession No.
    GWHBDNS00000000
    GWH reannotation accession
    -
    GSA raw reads
    -
    GVM variations of the species
    -
    Submitter Organization
    Crop Science Institude, Zhejiang University
    Contact
    Bioinplant ZJU, bioinplant@zju.edu.cn
    Sequence author(s)
    Bioinplant ZJU
    Released Date
    2022-01-10
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    canu v1.8
    Sequencing & coverage
    PacBio 63.0
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Dongya Wu, et al. Genomic insights into the evolution of Echinochloa species as weed and orphancrop. Nature Communications. 2022, 13.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHBDNS00000000 - eo_v2 Draft genome in chromosome level 2022-01-10 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 945,562,925
    GC content 46.06%
    Genome sequence No. 370
    Maximum genome sequence length (bp) 71,835,555
    Minimum genome sequence length (bp) 2,337
    Average genome sequence length (bp) 2,555,575
    Genome sequence N50 (bp) 54,427,921
    Genome sequence N90 (bp) 38,044,054
    Annotation of Whole Genome Assembly
    Protein Total
    Total 68,541 68,541