- Scientific Name
- Echinochloa crus-galli
- Common Names
- barnyard grass, cockspur grass; Echinochloa crusgalli
- Bioproject
- PRJCA003883
- Biosample
- SAMC393329
- Accession No.
- GWHBDNR00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Crop Science Institude, Zhejiang University
- Contact
- Bioinplant ZJU(bioinplant@zju.edu.cn)
- Sequence author(s)
- Bioinplant ZJU
- Released Date
- 2022-01-10
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- canu v1.8
- Sequencing & coverage
- PacBio 86.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Dongya Wu, et al. Genomic insights into the evolution of Echinochloa species as weed and orphancrop. Nature Communications. 2022, 13.
Statistics of Genome Assembly
| Genome size (bp) | 1,339,828,847 |
| GC content | 45.91% |
| Genome sequence No. | 2,066 |
| Maximum genome sequence length (bp) | 66,322,096 |
| Minimum genome sequence length (bp) | 1,425 |
| Average genome sequence length (bp) | 648,513 |
| Genome sequence N50 (bp) | 49,730,318 |
| Genome sequence N90 (bp) | 36,391,468 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 104,774 | 104,774 |